Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015879810.1_cds_XP_016437300.1_33074
CDS Infomation

[gene=LOC107763337] [db_xref=GeneID:107763337] [protein=putative lysine-specific demethylase JMJD5] [protein_id=XP_016437300.1] [location=complement(join(10800..10976,11533..11625,11818..11961,12056..12190,12526..12735,14337..14834))] [gbkey=CDS]
Sequence

ATGTCCACGTCAGCCACTGACGTCGCCGGCGAAACCACCGGTTCCTACGACGGCGTCCTA
GAAACTCCGTTTCTCGACGCGGAACGCTCCAATCTCCTTCAGCTGATAGCGGAGGAAGGC
GGCTACGCGTACGTTAGCATGGCGACACTCGCAGCCGCCGGAGATATTCGAGCGGCGGAG
GCGGCGAAGGAGATGGCATGGGAACAGTTACACTCAGGTCCATGGCATTCGGTTGTGCCT
GTATGGAGAGATGCGTATTCCATGGCGTGTGTACACTTGGCGAAGCTTCATTATGCTTCC
GGTGAGATTACTCAGGCGATTAGAGCACTTGATATGGGAATTATTATGGGAGGAATGATG
CTTAGAGATGAGCTGAACCTCGCAATCAAAAAGGCGTCGAAGAAAGCGCGGAGTATGCTG
TTAGCTTCCTCGGAAAATGGAGGCGAAAAAGGTGAACCCGAGATTAAATTTGTTTCTCAA
GAAATTAACGTGGCGGAGGTGCAGCAGTTTTTACCTATTAAGTCACTGTCTTGTAAGACA
GTAGGGAAAAGGTCAGCCTTATCGTTGGAGGCATTCCTGAGAGACCATTATTTATCAGGA
ATCCCGGTGATAATCAGAGATTCCATGGATCACTGGCCTGCCAAGAGTAAGTGGAATGAC
ATGAATTACCTTAGAAGGGTTGCTGGCTTCCGTACAGTCCCTGTTGAGGTCGGAAAGAAC
TATTTGTGCCCAGAATGGAAGCAAGAGCTGATCACATTCTCTGAATTTCTTGAGAGAATC
CGGTCCGATGATACTACCTCTGTGGAAACTACGTACTTAGCTCAGCATCAATTATTTGAT
CAAATACAAGAGCTACGACAAGATATTGTTATTCCTGATTATTGTTTTACTGGAGGTGGG
GAGATCAGGTCGCTTAATGCTTGGTTTGGTCCTGCCGGGACTGTGACGCCTTTGCATCAT
GATCCTCACCATAATATACTTGCTCAGGTTGTTGGCAAAAAGTATGTACGGCTTTACTCA
GCATCACTTTCGGATGAGCTGCTCCCACATAGTGAAACCATGCTTAGCAATTCCAGCCAG
GTTGATCTAGACAACATCGATGAGAAAGAGTTCCCGAAGATATTAGACCTGGAGTTTCAG
GACTGCATTTTAGAGGAAGGTGAGATGCTTTACATCCCCCCTAAGTGGTGGCACTACGTC
CGCTCTCTCACGACAAGCTTTTCAGTTAGCTTTTGGTGGAGTGGCGCCGAAAATTAG

Peptide Sequence

PEP ID

XP_016437300.1
PEP Infomation

PREDICTED: putative lysine-specific demethylase JMJD5 [Nicotiana tabacum]
Sequence

MSTSATDVAGETTGSYDGVLETPFLDAERSNLLQLIAEEGGYAYVSMATLAAAGDIRAAE
AAKEMAWEQLHSGPWHSVVPVWRDAYSMACVHLAKLHYASGEITQAIRALDMGIIMGGMM
LRDELNLAIKKASKKARSMLLASSENGGEKGEPEIKFVSQEINVAEVQQFLPIKSLSCKT
VGKRSALSLEAFLRDHYLSGIPVIIRDSMDHWPAKSKWNDMNYLRRVAGFRTVPVEVGKN
YLCPEWKQELITFSEFLERIRSDDTTSVETTYLAQHQLFDQIQELRQDIVIPDYCFTGGG
EIRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYVRLYSASLSDELLPHSETMLSNSSQ
VDLDNIDEKEFPKILDLEFQDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSGAEN

Transcript Sequence

Gene sequence data has not been registered.